Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_10260 | Not Available | Positive | 2397131 - 2397325 | 7248.88 |
| porin family protein | DW035_10265 | Not Available | Positive | 2397386 - 2397916 | 19442.0 |
| port family protein | DW035_10270 | Not Available | Positive | 2398042 - 2398680 | 22825.5 |
| mannose-6-phosphate isomerase | DW035_10295 | Not Available | Negative | 2401636 - 2402607 | 36813.5 |
| tonb-dependent receptor | DW035_10300 | Not Available | Positive | 2402824 - 2405514 | 100513.0 |
| hypothetical protein | DW035_10305 | Not Available | Positive | 2405573 - 2406856 | 45401.6 |
| yaaa family protein | DW035_10310 | Not Available | Negative | 2406921 - 2407679 | 29541.8 |
| tlpa family protein disulfide reductase | DW035_10315 | Not Available | Positive | 2407793 - 2408311 | 19445.8 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DW035_10320 | Not Available | Negative | 2408479 - 2411703 | 120105.0 |
| tryptophan--trna ligase | DW035_10325 | Not Available | Positive | 2411859 - 2412953 | 41335.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

