Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_09900 | Not Available | Negative | 2323846 - 2325372 | 58746.2 |
| blai/meci/copy family transcriptional regulator | DW035_09905 | Not Available | Negative | 2325503 - 2325838 | 12866.4 |
| peptide chain release factor 3 | DW035_09910 | Not Available | Negative | 2326132 - 2327703 | 59844.5 |
| dtdp-4-dehydrorhamnose reductase | DW035_09915 | Not Available | Negative | 2327706 - 2328563 | 31983.1 |
| duf4924 family protein | DW035_09920 | Not Available | Negative | 2328577 - 2329122 | 21264.1 |
| lyse family translocator | DW035_09925 | Not Available | Negative | 2329129 - 2329788 | 24058.4 |
| anaerobic c4-dicarboxylate transporter | DW035_09930 | Not Available | Negative | 2330056 - 2331366 | 45996.1 |
| phosphoribosylformylglycinamidine synthase | DW035_09935 | Not Available | Positive | 2331511 - 2335218 | 137443.0 |
| branched-chain amino acid aminotransferase | DW035_09940 | Not Available | Positive | 2335379 - 2336398 | 37843.2 |
| arginase family protein | DW035_09945 | Not Available | Negative | 2336480 - 2337271 | 30250.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

