Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | DW035_09845 | Not Available | Negative | 2308010 - 2309299 | 47693.4 |
| arac family transcriptional regulator | DW035_09855 | Not Available | Positive | 2311914 - 2312831 | 35290.5 |
| duf4301 family protein | DW035_09860 | Not Available | Negative | 2312913 - 2314436 | 56862.9 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DW035_09865 | Not Available | Positive | 2314572 - 2316782 | 85032.8 |
| duf1573 domain-containing protein | DW035_09870 | Not Available | Positive | 2316885 - 2317289 | 14627.7 |
| oligopeptide transporter, opt family | DW035_09875 | Not Available | Positive | 2317583 - 2319571 | 70332.6 |
| alpha/beta hydrolase | DW035_09880 | Not Available | Positive | 2319591 - 2320439 | 31375.3 |
| 30s ribosomal protein s16 | DW035_09885 | Not Available | Positive | 2320546 - 2321088 | 19554.1 |
| mate family efflux transporter | DW035_09890 | Not Available | Positive | 2321197 - 2322528 | 49495.8 |
| duf4837 family protein | DW035_09895 | Not Available | Negative | 2322744 - 2323796 | 40278.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

