Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_00790 | Not Available | Negative | 220505 - 221881 | 52604.4 |
| tetratricopeptide repeat protein | DW035_00795 | Not Available | Negative | 221842 - 222411 | 21653.3 |
| dna-binding protein | DW035_00800 | Not Available | Negative | 222540 - 222950 | 16350.0 |
| beta-galactosidase | DW035_00805 | Not Available | Negative | 223092 - 226004 | 109629.0 |
| glycosyl hydrolase family 2 | DW035_00810 | Not Available | Positive | 226193 - 228967 | 104733.0 |
| atp-binding protein | DW035_00815 | Not Available | Negative | 228989 - 230527 | 55989.4 |
| duf4369 domain-containing protein | DW035_00820 | Not Available | Negative | 230550 - 231602 | 40564.2 |
| hypothetical protein | DW035_00825 | Not Available | Negative | 231712 - 233388 | 61571.7 |
| site-specific tyrosine recombinase xerd | DW035_00830 | Not Available | Negative | 233536 - 234447 | 35046.6 |
| type ii 3-dehydroquinate dehydratase | DW035_00835 | Not Available | Positive | 234513 - 234944 | 16083.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

