Phocaeicola plebeius strain AF39-11

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius strain AF39-11 is a Gram-negative, non-motile, rod-shaped bacterium that is part of the animal intestinal microflora. This strain is classified as a chemoheterotroph, utilizing organic compounds as its energy source, and is an anaerobe, thriving in environments devoid of oxygen. Its optimal growth temperature is 37°C, placing it within the mesophilic temperature range, which is conducive to growth in warm-blooded animals. This bacterium has a single replicon and is characterized by the absence of the ability to form spores. P. plebeius strain AF39-11 has been identified in various hosts, including Homo sapiens (humans), Gallus gallus (domestic chickens), and Bos (cattle). The presence of flagella indicates that it has the potential for motility; however, as noted, the strain itself is non-motile. Given its habitat in the intestinal microflora of these diverse hosts, P. plebeius may play a role in the gut ecosystem, contributing to the digestion of complex carbohydrates, maintaining gut health, and potentially influencing host metabolism. The strain's presence across different animal species suggests a broader ecological significance, possibly reflecting its adaptability and importance in various gastrointestinal environments. This adaptability may provide insights into the microbial interactions within the gut and their impact on host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
Strainstrain AF39-11

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius strain AF39-11
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain AF39-11 AF39-11.Scaf76, whole genome

Gene Summary

Adenine Count

1032276 bp

Thymine Count

1042933 bp

Guanine Count

824714 bp

Cytosine Count

828950 bp

Genome Length

3729283 bp

Protein-coding Genes

3024 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDW035_00790Not AvailableNegative220505 - 22188152604.4
tetratricopeptide repeat proteinDW035_00795Not AvailableNegative221842 - 22241121653.3
dna-binding proteinDW035_00800Not AvailableNegative222540 - 22295016350.0
beta-galactosidaseDW035_00805Not AvailableNegative223092 - 226004109629.0
glycosyl hydrolase family 2DW035_00810Not AvailablePositive226193 - 228967104733.0
atp-binding proteinDW035_00815Not AvailableNegative228989 - 23052755989.4
duf4369 domain-containing proteinDW035_00820Not AvailableNegative230550 - 23160240564.2
hypothetical proteinDW035_00825Not AvailableNegative231712 - 23338861571.7
site-specific tyrosine recombinase xerdDW035_00830Not AvailableNegative233536 - 23444735046.6
type ii 3-dehydroquinate dehydrataseDW035_00835Not AvailablePositive234513 - 23494416083.2

Displaying genes 181 – 190 of 3121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

327 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 327 metabolites

Health Effects

No health effects information available for this bacterium.