Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_09730 | Not Available | Positive | 2282167 - 2286414 | 161775.0 |
| sdr family nad(p)-dependent oxidoreductase | DW035_09735 | Not Available | Positive | 2286414 - 2287157 | 27952.5 |
| mate family efflux transporter | DW035_09740 | Not Available | Negative | 2287147 - 2288517 | 49873.4 |
| efflux rnd transporter periplasmic adaptor subunit | DW035_09760 | Not Available | Negative | 2290711 - 2291388 | 25940.1 |
| mate family efflux transporter | DW035_09765 | Not Available | Positive | 2291622 - 2292965 | 48932.6 |
| crp/fnr family transcriptional regulator | DW035_09770 | Not Available | Positive | 2293005 - 2293580 | 22044.7 |
| duf3828 domain-containing protein | DW035_09775 | Not Available | Negative | 2293593 - 2294426 | 31789.8 |
| hypothetical protein | DW035_09780 | Not Available | Positive | 2295013 - 2295720 | 27661.6 |
| atp-binding protein | DW035_09785 | Not Available | Positive | 2296055 - 2297455 | 52748.3 |
| rlob domain-containing protein | DW035_09790 | Not Available | Positive | 2297445 - 2298275 | 32029.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

