Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybbr-like domain-containing protein | DW035_09680 | Not Available | Negative | 2271540 - 2272574 | 39234.8 |
| preprotein translocase subunit yajc | DW035_09685 | Not Available | Negative | 2272587 - 2272895 | 11212.9 |
| transcription antitermination factor nusb | DW035_09690 | Not Available | Negative | 2272936 - 2273862 | 36177.3 |
| duf3276 family protein | DW035_09695 | Not Available | Positive | 2274043 - 2274417 | 14455.2 |
| 50s ribosomal protein l25/general stress protein ctc | DW035_09700 | Not Available | Positive | 2274610 - 2275206 | 21654.7 |
| aminoacyl-trna hydrolase | DW035_09705 | Not Available | Positive | 2275240 - 2275803 | 20808.3 |
| rna-binding s4 domain-containing protein | DW035_09710 | Not Available | Positive | 2275809 - 2276237 | 16464.7 |
| sodium:proton antiporter | DW035_09715 | Not Available | Negative | 2276298 - 2278574 | 84020.3 |
| copper-translocating p-type atpase | DW035_09720 | Not Available | Positive | 2278713 - 2281253 | 92264.6 |
| hypothetical protein | DW035_09725 | Not Available | Positive | 2281387 - 2282142 | 27727.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

