Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_09630 | Not Available | Negative | 2263238 - 2263504 | 10105.6 |
| hypothetical protein | DW035_09635 | Not Available | Positive | 2263512 - 2263883 | 14171.4 |
| cobalamin biosynthesis protein cobd | DW035_09640 | Not Available | Negative | 2264037 - 2264978 | 34666.6 |
| pyridoxal phosphate-dependent class ii aminotransferase | DW035_09645 | Not Available | Negative | 2264960 - 2265973 | 37651.9 |
| cobyric acid synthase | DW035_09650 | Not Available | Negative | 2265966 - 2267984 | 74682.4 |
| adenosylcobinamide-gdp ribazoletransferase | DW035_09655 | Not Available | Negative | 2268004 - 2268750 | 27851.9 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | DW035_09660 | Not Available | Negative | 2268755 - 2269795 | 38020.3 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | DW035_09665 | Not Available | Negative | 2269799 - 2270308 | 19342.1 |
| hypothetical protein | DW035_09670 | Not Available | Negative | 2270459 - 2270872 | 15252.3 |
| dephospho-coa kinase | DW035_09675 | Not Available | Negative | 2270938 - 2271543 | 22372.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

