Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna alkylation repair protein | DW035_09475 | Not Available | Negative | 2230856 - 2231566 | 27752.7 |
| tryptophan synthase subunit beta | DW035_09480 | Not Available | Positive | 2231878 - 2233074 | 43837.9 |
| anthranilate synthase component i family protein | DW035_09485 | Not Available | Positive | 2233087 - 2234487 | 52667.2 |
| aminodeoxychorismate/anthranilate synthase component ii | DW035_09490 | Not Available | Positive | 2234494 - 2235060 | 21066.2 |
| anthranilate phosphoribosyltransferase | DW035_09495 | Not Available | Positive | 2235103 - 2236098 | 36365.9 |
| indole-3-glycerol phosphate synthase trpc | DW035_09500 | Not Available | Positive | 2236106 - 2236894 | 28933.0 |
| phosphoribosylanthranilate isomerase | DW035_09505 | Not Available | Positive | 2236891 - 2237514 | 23305.6 |
| tryptophan synthase subunit alpha | DW035_09510 | Not Available | Positive | 2237527 - 2238306 | 29199.4 |
| type i asparaginase | DW035_09515 | Not Available | Positive | 2238393 - 2239442 | 38750.0 |
| dna-binding response regulator | DW035_09520 | Not Available | Positive | 2239546 - 2240232 | 26192.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

