Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trai | DW035_09420 | Not Available | Negative | 2222674 - 2223117 | 16580.9 |
| tonb-dependent receptor | DW035_09425 | Not Available | Positive | 2223118 - 2223952 | 31446.2 |
| hypothetical protein | DW035_09430 | Not Available | Positive | 2223956 - 2224306 | 13401.3 |
| luxr family transcriptional regulator | DW035_09435 | Not Available | Negative | 2224247 - 2225008 | 29527.4 |
| hypothetical protein | DW035_09440 | Not Available | Positive | 2225214 - 2225558 | 13523.2 |
| laci family transcriptional regulator | DW035_09450 | Not Available | Positive | 2226048 - 2226701 | 24552.0 |
| thiol peroxidase | DW035_09455 | Not Available | Positive | 2226960 - 2227514 | 19865.7 |
| acyloxyacyl hydrolase | DW035_09460 | Not Available | Negative | 2227534 - 2228766 | 45585.7 |
| hypothetical protein | DW035_09465 | Not Available | Negative | 2228753 - 2229748 | 37616.5 |
| 50s ribosomal protein l11 methyltransferase | DW035_09470 | Not Available | Positive | 2229981 - 2230826 | 31394.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

