Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mobilization protein | DW035_09320 | Not Available | Negative | 2207277 - 2208353 | 40904.2 |
| duf3853 family protein | DW035_09325 | Not Available | Negative | 2208368 - 2208676 | 11286.9 |
| hypothetical protein | DW035_09330 | Not Available | Negative | 2208900 - 2209925 | 40750.5 |
| duf1016 family protein | DW035_09335 | Not Available | Negative | 2209937 - 2211226 | 48944.5 |
| site-specific integrase | DW035_09340 | Not Available | Negative | 2211292 - 2212575 | 50297.2 |
| site-specific integrase | DW035_09345 | Not Available | Positive | 2213020 - 2214249 | 46886.4 |
| orf6n domain-containing protein | DW035_09350 | Not Available | Positive | 2214334 - 2214864 | 20278.7 |
| hypothetical protein | DW035_09355 | Not Available | Positive | 2215008 - 2215208 | 7615.13 |
| hypothetical protein | DW035_09360 | Not Available | Positive | 2215235 - 2215471 | 8928.02 |
| antirestriction protein arda | DW035_09365 | Not Available | Positive | 2215499 - 2216032 | 21116.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

