Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease h | DW035_00740 | Not Available | Negative | 210824 - 211450 | 23816.4 |
| arginine--trna ligase | DW035_00745 | Not Available | Negative | 211534 - 213351 | 68463.3 |
| arac family transcriptional regulator | DW035_00750 | Not Available | Negative | 213437 - 213826 | 15335.8 |
| insulinase family protein | DW035_00755 | Not Available | Negative | 213900 - 215123 | 46622.5 |
| tigr00730 family rossman fold protein | DW035_00760 | Not Available | Positive | 215231 - 215764 | 19927.2 |
| sis domain-containing protein | DW035_00765 | Not Available | Positive | 215788 - 216390 | 21494.1 |
| glycoside hydrolase family 88 protein | DW035_00770 | Not Available | Negative | 216471 - 217601 | 43477.8 |
| exopolygalacturonase | DW035_00775 | Not Available | Positive | 217839 - 219173 | 50537.6 |
| nucleoside-diphosphate kinase | DW035_00780 | Not Available | Negative | 219213 - 219689 | 17869.7 |
| dna-binding response regulator | DW035_00785 | Not Available | Negative | 219787 - 220434 | 24262.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

