Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l9 | DW035_08840 | Not Available | Positive | 2105690 - 2106139 | 16203.9 |
| hypothetical protein | DW035_08845 | Not Available | Negative | 2106495 - 2106695 | 6468.49 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DW035_08850 | Not Available | Positive | 2106999 - 2108315 | 48920.8 |
| glycosyltransferase family 2 protein | DW035_08855 | Not Available | Positive | 2108312 - 2109334 | 39238.1 |
| septum formation protein maf | DW035_08860 | Not Available | Negative | 2109331 - 2109927 | 22692.4 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | DW035_08865 | Not Available | Negative | 2109937 - 2110455 | 19033.1 |
| duf2520 domain-containing protein | DW035_08870 | Not Available | Negative | 2110474 - 2111271 | 29973.9 |
| hypothetical protein | DW035_08875 | Not Available | Negative | 2111268 - 2111603 | 12272.7 |
| nad(p)h nitroreductase | DW035_08880 | Not Available | Negative | 2111603 - 2112139 | 19992.0 |
| gnat family n-acetyltransferase | DW035_08885 | Not Available | Positive | 2112215 - 2113189 | 38151.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

