Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional oligoribonuclease/pap phosphatase nrna | DW035_08790 | Not Available | Positive | 2094348 - 2095385 | 39110.2 |
| duf4827 domain-containing protein | DW035_08795 | Not Available | Positive | 2095479 - 2096159 | 25207.0 |
| phosphoglucosamine mutase | DW035_08800 | Not Available | Positive | 2096185 - 2097573 | 50445.6 |
| coproporphyrinogen iii oxidase family protein | DW035_08805 | Not Available | Negative | 2097928 - 2099061 | 43692.7 |
| elongation factor g | DW035_08810 | Not Available | Positive | 2099280 - 2101439 | 80683.5 |
| sensor histidine kinase | DW035_08815 | Not Available | Positive | 2101705 - 2103255 | 59659.4 |
| dna-binding response regulator | DW035_08820 | Not Available | Positive | 2103259 - 2103957 | 26812.5 |
| marr family transcriptional regulator | DW035_08825 | Not Available | Negative | 2104399 - 2104845 | 17430.3 |
| 30s ribosomal protein s6 | DW035_08830 | Not Available | Positive | 2105052 - 2105399 | 13588.4 |
| 30s ribosomal protein s18 | DW035_08835 | Not Available | Positive | 2105402 - 2105671 | 10561.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

