Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | DW035_08535 | Not Available | Negative | 2029055 - 2032612 | 129614.0 |
| atp-binding protein | DW035_08540 | Not Available | Negative | 2032653 - 2033831 | 45993.8 |
| amidophosphoribosyltransferase | DW035_08545 | Not Available | Negative | 2034154 - 2036037 | 71734.1 |
| glutamate synthase large subunit | DW035_08550 | Not Available | Positive | 2036341 - 2040873 | 166944.0 |
| glutamate synthase subunit beta | DW035_08555 | Not Available | Positive | 2040904 - 2042247 | 48952.8 |
| asparagine synthase b | DW035_08560 | Not Available | Positive | 2042285 - 2043955 | 62645.5 |
| diaminopimelate epimerase | DW035_08565 | Not Available | Positive | 2043970 - 2044776 | 29266.2 |
| ll-diaminopimelate aminotransferase | DW035_08570 | Not Available | Positive | 2044787 - 2046022 | 45357.8 |
| hypothetical protein | DW035_08575 | Not Available | Negative | 2046318 - 2047025 | 27008.2 |
| hypothetical protein | DW035_08580 | Not Available | Negative | 2047166 - 2048527 | 53025.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

