Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-succinylbenzoic acid--coa ligase | DW035_08485 | Not Available | Negative | 2017247 - 2018398 | 42162.0 |
| o-succinylbenzoate synthase | DW035_08490 | Not Available | Negative | 2018400 - 2019458 | 39931.0 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DW035_08495 | Not Available | Negative | 2019547 - 2020371 | 30464.6 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DW035_08500 | Not Available | Negative | 2020376 - 2022040 | 62840.8 |
| isochorismate synthase | DW035_08505 | Not Available | Negative | 2022060 - 2023193 | 43132.3 |
| paai family thioesterase | DW035_08510 | Not Available | Negative | 2023190 - 2023603 | 14855.1 |
| histidine kinase | DW035_08515 | Not Available | Positive | 2023921 - 2025906 | 77896.3 |
| dna-binding response regulator | DW035_08520 | Not Available | Positive | 2025903 - 2026661 | 29235.6 |
| hypothetical protein | DW035_08525 | Not Available | Positive | 2026807 - 2028234 | 51861.6 |
| phosphodiesterase | DW035_08530 | Not Available | Negative | 2028357 - 2028896 | 20227.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

