Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5110 domain-containing protein | DW035_08435 | Not Available | Positive | 1999151 - 2001829 | 101067.0 |
| sialate o-acetylesterase | DW035_08440 | Not Available | Positive | 2001873 - 2002742 | 31310.8 |
| response regulator | DW035_08445 | Not Available | Negative | 2002802 - 2006983 | 158849.0 |
| sialate o-acetylesterase | DW035_08450 | Not Available | Positive | 2007233 - 2008855 | 61498.3 |
| mfs transporter | DW035_08455 | Not Available | Positive | 2008865 - 2010361 | 55048.3 |
| 1,4-beta-xylanase | DW035_08460 | Not Available | Positive | 2010377 - 2011525 | 43508.0 |
| alpha-n-arabinofuranosidase | DW035_08465 | Not Available | Positive | 2011575 - 2012552 | 37104.5 |
| alpha-glucuronidase | DW035_08470 | Not Available | Positive | 2012545 - 2014557 | 76288.8 |
| n-acetyltransferase | DW035_08475 | Not Available | Positive | 2014701 - 2015003 | 11109.1 |
| sodium:proton antiporter | DW035_08480 | Not Available | Negative | 2015021 - 2017162 | 80577.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

