Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose 4-epimerase gale | DW035_08335 | Not Available | Positive | 1962831 - 1963865 | 37990.7 |
| hypothetical protein | DW035_08340 | Not Available | Negative | 1963918 - 1964244 | 12281.9 |
| chloride channel protein | DW035_08345 | Not Available | Positive | 1964317 - 1965594 | 46097.2 |
| tonb-dependent receptor | DW035_08350 | Not Available | Positive | 1966152 - 1969244 | 115468.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_08355 | Not Available | Positive | 1969258 - 1971156 | 73164.1 |
| susc/raga family tonb-linked outer membrane protein | DW035_08360 | Not Available | Positive | 1971198 - 1974044 | 106991.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_08365 | Not Available | Positive | 1974069 - 1975844 | 66182.9 |
| duf1735 domain-containing protein | DW035_08370 | Not Available | Positive | 1975866 - 1976885 | 37890.4 |
| hypothetical protein | DW035_08375 | Not Available | Positive | 1976904 - 1979162 | 83680.5 |
| glycosyhydrolase | DW035_08380 | Not Available | Positive | 1979378 - 1981915 | 97714.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

