Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor 4 | DW035_08285 | Not Available | Positive | 1952877 - 1954658 | 66363.4 |
| sigma-70 family rna polymerase sigma factor | DW035_08290 | Not Available | Positive | 1954943 - 1955545 | 24256.5 |
| threonine ammonia-lyase | DW035_08295 | Not Available | Positive | 1955662 - 1956858 | 42745.9 |
| rsec/mucc family positive regulator of sigma(e) | DW035_08300 | Not Available | Positive | 1957002 - 1957427 | 15530.3 |
| fe-s cluster domain-containing protein | DW035_08305 | Not Available | Positive | 1957445 - 1958410 | 33262.4 |
| electron transport complex subunit rsxc | DW035_08310 | Not Available | Positive | 1958444 - 1959781 | 47366.3 |
| rnfabcdge type electron transport complex subunit d | DW035_08315 | Not Available | Positive | 1959794 - 1960783 | 35420.6 |
| rnfabcdge type electron transport complex subunit g | DW035_08320 | Not Available | Positive | 1960780 - 1961436 | 22337.1 |
| electron transport complex subunit e | DW035_08325 | Not Available | Positive | 1961449 - 1962033 | 20755.7 |
| electron transport complex subunit rsxa | DW035_08330 | Not Available | Positive | 1962053 - 1962655 | 21314.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

