Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | DW035_08020 | Not Available | Negative | 1890823 - 1891413 | 22729.0 |
| yitt family protein | DW035_08025 | Not Available | Negative | 1891435 - 1892322 | 32581.6 |
| ll-diaminopimelate aminotransferase | DW035_08030 | Not Available | Positive | 1892480 - 1893709 | 45990.2 |
| glutamine synthetase type iii | DW035_08035 | Not Available | Positive | 1893765 - 1895954 | 82391.0 |
| putative transporter | DW035_08040 | Not Available | Positive | 1896116 - 1897777 | 59461.9 |
| fructose-1,6-bisphosphatase | DW035_08045 | Not Available | Positive | 1897801 - 1899798 | 76712.6 |
| hypothetical protein | DW035_08050 | Not Available | Negative | 1899951 - 1902029 | 76387.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_08055 | Not Available | Negative | 1902083 - 1903846 | 67100.0 |
| susc/raga family tonb-linked outer membrane protein | DW035_08060 | Not Available | Negative | 1903865 - 1906885 | 112975.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_08065 | Not Available | Negative | 1906926 - 1908914 | 76738.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

