Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| replication-associated recombination protein a | DW035_07970 | Not Available | Negative | 1877629 - 1878903 | 47370.2 |
| glutamine--trna ligase/yqey domain fusion protein | DW035_07975 | Not Available | Positive | 1879361 - 1881100 | 67088.3 |
| duf368 domain-containing protein | DW035_07980 | Not Available | Negative | 1881365 - 1882279 | 33430.9 |
| thiol peroxidase | DW035_07985 | Not Available | Positive | 1882408 - 1882911 | 17780.7 |
| mannose-1-phosphate guanylyltransferase | DW035_07990 | Not Available | Negative | 1883001 - 1884065 | 40295.4 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DW035_07995 | Not Available | Positive | 1884148 - 1884981 | 29229.7 |
| [acyl-carrier-protein] s-malonyltransferase | DW035_08000 | Not Available | Positive | 1885042 - 1885929 | 31376.9 |
| alpha-amylase | DW035_08005 | Not Available | Positive | 1886043 - 1887743 | 65202.8 |
| long-chain fatty acid--coa ligase | DW035_08010 | Not Available | Positive | 1887870 - 1889528 | 62754.1 |
| hypothetical protein | DW035_08015 | Not Available | Positive | 1889540 - 1890787 | 44052.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

