Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-cys | Not Available | Not Available | Positive | 1859917 - 1859988 | Not Available |
| glucose-1-phosphate thymidylyltransferase | DW035_07875 | Not Available | Positive | 1860183 - 1861076 | 33062.9 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DW035_07880 | Not Available | Positive | 1861097 - 1861672 | 22261.4 |
| gnat family n-acetyltransferase | DW035_07885 | Not Available | Negative | 1861737 - 1863290 | 59994.8 |
| dicarboxylate/amino acid:cation symporter | DW035_07890 | Not Available | Positive | 1863400 - 1864575 | 41815.0 |
| hypothetical protein | DW035_07895 | Not Available | Positive | 1864609 - 1865043 | 17095.6 |
| molecular chaperone djla | DW035_07900 | Not Available | Negative | 1865221 - 1866006 | 29357.3 |
| cys-trna(pro) deacylase | DW035_07905 | Not Available | Negative | 1866033 - 1866515 | 17710.7 |
| excinuclease abc subunit uvra | DW035_07910 | Not Available | Negative | 1866515 - 1869352 | 105838.0 |
| lysm peptidoglycan-binding domain-containing protein | DW035_07915 | Not Available | Positive | 1869548 - 1871347 | 68032.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

