Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b6 | DW035_07820 | Not Available | Negative | 1850041 - 1851429 | 51081.7 |
| cytochrome c assembly protein | DW035_07825 | Not Available | Negative | 1851482 - 1852264 | 30021.9 |
| hypothetical protein | DW035_07830 | Not Available | Negative | 1852293 - 1853195 | 33943.6 |
| l-fucose:h+ symporter permease | DW035_07835 | Not Available | Negative | 1853319 - 1854632 | 48581.2 |
| rhamnulokinase | DW035_07840 | Not Available | Negative | 1854675 - 1856018 | 49190.2 |
| class ii aldolase/adducin family protein | DW035_07845 | Not Available | Negative | 1856015 - 1856653 | 23433.4 |
| l-fucose isomerase | DW035_07850 | Not Available | Negative | 1856726 - 1858498 | 65433.9 |
| gntr family transcriptional regulator | DW035_07855 | Not Available | Negative | 1858603 - 1859589 | 38081.4 |
| Trna-lys | Not Available | Not Available | Positive | 1859729 - 1859804 | Not Available |
| Trna-cys | Not Available | Not Available | Positive | 1859817 - 1859891 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

