Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional aspartate kinase/homoserine dehydrogenase i | DW035_07770 | Not Available | Negative | 1834654 - 1837086 | 88766.6 |
| dna repair protein rada | DW035_07775 | Not Available | Positive | 1837482 - 1838855 | 50303.2 |
| duf3868 domain-containing protein | DW035_07780 | Not Available | Negative | 1838948 - 1840414 | 55569.2 |
| hypothetical protein | DW035_07785 | Not Available | Negative | 1840433 - 1841974 | 56518.8 |
| hypothetical protein | DW035_07790 | Not Available | Negative | 1841991 - 1843688 | 61425.4 |
| fad-binding protein | DW035_07795 | Not Available | Positive | 1843964 - 1845610 | 60833.1 |
| dna-binding response regulator | DW035_07800 | Not Available | Positive | 1845622 - 1846209 | 21915.8 |
| tonb-dependent receptor | DW035_07805 | Not Available | Positive | 1846296 - 1848755 | 92158.9 |
| transcriptional regulator | DW035_07810 | Not Available | Negative | 1848924 - 1849211 | 10551.9 |
| hypothetical protein | DW035_07815 | Not Available | Negative | 1849205 - 1849822 | 23682.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

