Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4369 domain-containing protein | DW035_07720 | Not Available | Negative | 1821536 - 1822231 | 26202.9 |
| s46 family peptidase | DW035_07725 | Not Available | Positive | 1822407 - 1824578 | 81226.9 |
| s46 family peptidase | DW035_07730 | Not Available | Positive | 1824578 - 1826740 | 81566.0 |
| exodeoxyribonuclease vii small subunit | DW035_07735 | Not Available | Negative | 1826779 - 1826988 | 8037.58 |
| exodeoxyribonuclease vii large subunit | DW035_07740 | Not Available | Negative | 1826990 - 1828294 | 49715.9 |
| serine protease | DW035_07745 | Not Available | Negative | 1828284 - 1829675 | 50918.4 |
| mate family efflux transporter | DW035_07750 | Not Available | Positive | 1829799 - 1831172 | 49663.7 |
| cytidylate kinase-like family protein | DW035_07755 | Not Available | Positive | 1831242 - 1831871 | 23573.0 |
| threonine synthase | DW035_07760 | Not Available | Negative | 1832115 - 1833416 | 48020.6 |
| cofactor-independent phosphoglycerate mutase | DW035_07765 | Not Available | Negative | 1833428 - 1834642 | 44584.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

