Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tir domain-containing protein | DW035_00580 | Not Available | Positive | 176465 - 176872 | 15412.4 |
| caspase family protein | DW035_00585 | Not Available | Positive | 176885 - 177865 | 35833.8 |
| tir domain-containing protein | DW035_00590 | Not Available | Positive | 177873 - 178415 | 21140.3 |
| sigma-54-dependent fis family transcriptional regulator | DW035_00595 | Not Available | Negative | 178711 - 180015 | 49054.6 |
| response regulator | DW035_00600 | Not Available | Negative | 180012 - 182336 | 87797.3 |
| tolc family protein | DW035_00605 | Not Available | Negative | 182481 - 183839 | 49620.9 |
| acrb/acrd/acrf family protein | DW035_00610 | Not Available | Negative | 183840 - 186953 | 112692.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW035_00615 | Not Available | Negative | 186950 - 188074 | 40572.9 |
| n-acetyltransferase | DW035_00620 | Not Available | Negative | 188071 - 188658 | 22639.1 |
| histidine kinase | DW035_00625 | Not Available | Positive | 188902 - 189987 | 41224.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

