Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s12 methylthiotransferase rimo | DW035_07520 | Not Available | Negative | 1779335 - 1780636 | 50551.8 |
| signal recognition particle-docking protein ftsy | DW035_07525 | Not Available | Negative | 1780633 - 1781598 | 35011.4 |
| duf4295 domain-containing protein | DW035_07530 | Not Available | Negative | 1781723 - 1781878 | 5813.16 |
| 50s ribosomal protein l33 | DW035_07535 | Not Available | Negative | 1781888 - 1782076 | 7205.97 |
| 50s ribosomal protein l28 | DW035_07540 | Not Available | Negative | 1782096 - 1782356 | 9755.0 |
| cina family protein | DW035_07545 | Not Available | Negative | 1782461 - 1782961 | 17609.9 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | DW035_07550 | Not Available | Negative | 1782982 - 1784004 | 36935.5 |
| type i methionyl aminopeptidase | DW035_07555 | Not Available | Negative | 1784020 - 1784874 | 31781.1 |
| hypothetical protein | DW035_07560 | Not Available | Positive | 1785127 - 1785345 | 8311.72 |
| methyltransferase | DW035_07565 | Not Available | Negative | 1785394 - 1786065 | 24547.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

