Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nif3-like dinuclear metal center hexameric protein | DW035_07370 | Not Available | Positive | 1749868 - 1750962 | 40635.8 |
| hypothetical protein | DW035_07375 | Not Available | Positive | 1750969 - 1751760 | 30615.0 |
| hypothetical protein | DW035_07380 | Not Available | Negative | 1751828 - 1752277 | 17618.4 |
| amp nucleosidase | DW035_07385 | Not Available | Positive | 1752482 - 1753258 | 29211.4 |
| dna polymerase iii subunit delta | DW035_07390 | Not Available | Positive | 1753269 - 1754285 | 38845.2 |
| xre family transcriptional regulator | DW035_07395 | Not Available | Positive | 1754995 - 1755444 | 17140.6 |
| dihydroorotate dehydrogenase electron transfer subunit | DW035_07400 | Not Available | Positive | 1755539 - 1756315 | 28263.8 |
| dihydroorotate dehydrogenase | DW035_07405 | Not Available | Positive | 1756303 - 1757214 | 32258.3 |
| hypothetical protein | DW035_07410 | Not Available | Negative | 1757467 - 1757916 | 17273.8 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DW035_07415 | Not Available | Negative | 1758003 - 1758683 | 25813.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

