Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DW035_07270 | Not Available | Positive | 1724415 - 1727549 | 116027.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_07275 | Not Available | Positive | 1727579 - 1729438 | 69988.3 |
| hypothetical protein | DW035_07280 | Not Available | Positive | 1729468 - 1729947 | 17816.0 |
| right-handed parallel beta-helix repeat-containing protein | DW035_07285 | Not Available | Positive | 1730121 - 1731920 | 67685.9 |
| duf5009 domain-containing protein | DW035_07290 | Not Available | Positive | 1731937 - 1733016 | 41919.9 |
| hypothetical protein | DW035_07295 | Not Available | Positive | 1733018 - 1733449 | 16693.8 |
| hypothetical protein | DW035_07300 | Not Available | Positive | 1733577 - 1733768 | 7356.05 |
| glycosyl hydrolase | DW035_07305 | Not Available | Positive | 1733797 - 1735458 | 62599.9 |
| glycoside hydrolase family 95 protein | DW035_07310 | Not Available | Positive | 1735462 - 1737948 | 92733.5 |
| dna (cytosine-5-)-methyltransferase | DW035_07315 | Not Available | Positive | 1738964 - 1740259 | 49327.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

