Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_07205 | Not Available | Positive | 1711359 - 1711553 | 7558.34 |
| tonb-dependent receptor | DW035_07215 | Not Available | Positive | 1712179 - 1715301 | 115566.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_07220 | Not Available | Positive | 1715310 - 1717253 | 72714.1 |
| hypothetical protein | DW035_07225 | Not Available | Positive | 1717272 - 1717748 | 17348.6 |
| gfo/idh/moca family oxidoreductase | DW035_07230 | Not Available | Positive | 1717859 - 1719262 | 53371.0 |
| dna-binding protein | DW035_07235 | Not Available | Negative | 1719724 - 1720047 | 12557.0 |
| dna-binding protein | DW035_07240 | Not Available | Negative | 1720090 - 1720401 | 12144.8 |
| duf3408 domain-containing protein | DW035_07245 | Not Available | Positive | 1720879 - 1721373 | 18532.7 |
| plasmid mobilization relaxosome protein mobc | DW035_07250 | Not Available | Positive | 1721569 - 1721973 | 15185.9 |
| mobilization protein | DW035_07255 | Not Available | Positive | 1721948 - 1722898 | 36224.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

