Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3'-5' exonuclease | DW035_07135 | Not Available | Negative | 1700860 - 1701636 | 29378.8 |
| dna polymerase iii subunit beta | DW035_07140 | Not Available | Negative | 1701661 - 1702785 | 41464.6 |
| duf3127 domain-containing protein | DW035_07145 | Not Available | Positive | 1702962 - 1703333 | 14117.6 |
| hypothetical protein | DW035_07150 | Not Available | Positive | 1703773 - 1703970 | 7077.09 |
| site-specific integrase | DW035_07160 | Not Available | Positive | 1705048 - 1706283 | 47382.5 |
| hypothetical protein | DW035_07170 | Not Available | Negative | 1706740 - 1706952 | 7943.69 |
| gnat family n-acetyltransferase | DW035_07175 | Not Available | Positive | 1706962 - 1707561 | 23413.9 |
| is4 family transposase | DW035_07180 | Not Available | Positive | 1707666 - 1709150 | 57099.6 |
| hypothetical protein | DW035_07190 | Not Available | Negative | 1709994 - 1710185 | 7410.91 |
| sigma-70 family rna polymerase sigma factor | DW035_07195 | Not Available | Positive | 1710214 - 1710774 | 22129.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

