Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crossover junction endodeoxyribonuclease ruvc | DW035_07085 | Not Available | Positive | 1687641 - 1688210 | 20886.1 |
| type i pullulanase | DW035_07090 | Not Available | Positive | 1688223 - 1690223 | 74422.7 |
| atp-binding cassette domain-containing protein | DW035_07095 | Not Available | Positive | 1690273 - 1691724 | 54890.5 |
| helix-turn-helix domain-containing protein | DW035_07100 | Not Available | Negative | 1691807 - 1692304 | 18958.7 |
| fimbrillin family protein | DW035_07105 | Not Available | Positive | 1692554 - 1694374 | 69713.6 |
| nitronate monooxygenase | DW035_07110 | Not Available | Negative | 1694499 - 1695449 | 34503.7 |
| serine protease | DW035_07115 | Not Available | Negative | 1695459 - 1697162 | 63179.1 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DW035_07120 | Not Available | Negative | 1697200 - 1697949 | 27404.2 |
| dna repair protein recn | DW035_07125 | Not Available | Negative | 1697968 - 1699635 | 62015.1 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DW035_07130 | Not Available | Negative | 1699642 - 1700847 | 43483.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

