Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription termination factor rho | DW035_07035 | Not Available | Negative | 1676036 - 1678069 | 75105.8 |
| rida family protein | DW035_07040 | Not Available | Positive | 1678368 - 1678745 | 13253.1 |
| hypothetical protein | DW035_07045 | Not Available | Positive | 1678822 - 1680030 | 45658.5 |
| mbl fold metallo-hydrolase | DW035_07050 | Not Available | Positive | 1680043 - 1680789 | 28486.8 |
| lactoylglutathione lyase | DW035_07055 | Not Available | Positive | 1680802 - 1681179 | 14644.2 |
| duf3805 domain-containing protein | DW035_07060 | Not Available | Positive | 1681214 - 1682038 | 31210.6 |
| atp-binding cassette domain-containing protein | DW035_07065 | Not Available | Positive | 1682079 - 1683944 | 72250.5 |
| long-chain fatty acid--coa ligase | DW035_07070 | Not Available | Negative | 1684089 - 1685741 | 62474.9 |
| na+/h+ antiporter nhac family protein | DW035_07075 | Not Available | Positive | 1685979 - 1687283 | 46404.1 |
| duf4286 family protein | DW035_07080 | Not Available | Positive | 1687339 - 1687644 | 11954.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

