Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4876 domain-containing protein | DW035_06985 | Not Available | Negative | 1665063 - 1666388 | 47939.9 |
| tonb-dependent receptor | DW035_06990 | Not Available | Negative | 1666395 - 1669331 | 108876.0 |
| Trna-lys | Not Available | Not Available | Positive | 1669524 - 1669599 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 1669631 - 1669706 | Not Available |
| port family protein | DW035_07005 | Not Available | Negative | 1669903 - 1670490 | 21938.3 |
| pyridoxamine 5'-phosphate oxidase family protein | DW035_07010 | Not Available | Negative | 1670908 - 1671399 | 18609.4 |
| iron-containing alcohol dehydrogenase | DW035_07015 | Not Available | Negative | 1671411 - 1672586 | 42878.6 |
| formate--tetrahydrofolate ligase | DW035_07020 | Not Available | Positive | 1672676 - 1674343 | 60263.0 |
| cobyrinate a,c-diamide synthase | DW035_07025 | Not Available | Positive | 1674348 - 1675670 | 49240.3 |
| Trna-gly | Not Available | Not Available | Positive | 1675765 - 1675840 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

