Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_06885 | Not Available | Negative | 1642231 - 1643664 | 54942.6 |
| insulinase family protein | DW035_06890 | Not Available | Negative | 1643743 - 1646562 | 106080.0 |
| thioredoxin-disulfide reductase | DW035_06895 | Not Available | Negative | 1646596 - 1647543 | 33739.3 |
| aspartate--trna ligase | DW035_06900 | Not Available | Positive | 1647758 - 1649521 | 66588.1 |
| gtra family protein | DW035_06905 | Not Available | Positive | 1649557 - 1649946 | 15086.8 |
| amino acid-binding protein | DW035_06910 | Not Available | Negative | 1649943 - 1650371 | 15834.2 |
| phenylacetate--coa ligase | DW035_06915 | Not Available | Negative | 1650384 - 1651682 | 49242.7 |
| glycine dehydrogenase (aminomethyl-transferring) | DW035_06920 | Not Available | Negative | 1651957 - 1654806 | 104186.0 |
| mbl fold metallo-hydrolase | DW035_06925 | Not Available | Negative | 1654853 - 1655494 | 23997.7 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | DW035_06930 | Not Available | Negative | 1655500 - 1656126 | 23805.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

