Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l20 | DW035_06595 | Not Available | Negative | 1582228 - 1582578 | 13195.3 |
| 50s ribosomal protein l35 | DW035_06600 | Not Available | Negative | 1582688 - 1582885 | 7371.38 |
| translation initiation factor if-3 | DW035_06605 | Not Available | Negative | 1582956 - 1583537 | 22045.8 |
| threonine--trna ligase | DW035_06610 | Not Available | Negative | 1583639 - 1585579 | 74303.2 |
| tetratricopeptide repeat protein | DW035_06615 | Not Available | Negative | 1585654 - 1587657 | 77862.0 |
| peptide deformylase | DW035_06620 | Not Available | Negative | 1587654 - 1588208 | 20925.5 |
| holliday junction resolvase ruvx | DW035_06625 | Not Available | Negative | 1588230 - 1588646 | 15695.4 |
| glutamine-hydrolyzing gmp synthase | DW035_06630 | Not Available | Positive | 1588833 - 1590386 | 57783.5 |
| mate family efflux transporter | DW035_06635 | Not Available | Negative | 1590452 - 1591825 | 49954.1 |
| duf4393 domain-containing protein | DW035_06645 | Not Available | Negative | 1595089 - 1595871 | 29796.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

