Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW035_06545 | Not Available | Negative | 1564236 - 1566644 | 90473.9 |
| abc transporter permease | DW035_06550 | Not Available | Negative | 1566660 - 1569041 | 90551.4 |
| abc transporter permease | DW035_06555 | Not Available | Negative | 1569062 - 1571446 | 92193.8 |
| abc transporter permease | DW035_06560 | Not Available | Negative | 1571468 - 1573864 | 90929.1 |
| sel1 repeat family protein | DW035_06565 | Not Available | Negative | 1573920 - 1574873 | 35576.5 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW035_06570 | Not Available | Negative | 1575114 - 1576364 | 47600.3 |
| tolc family protein | DW035_06575 | Not Available | Negative | 1576377 - 1577834 | 55893.4 |
| sigma-54-dependent fis family transcriptional regulator | DW035_06580 | Not Available | Positive | 1578025 - 1579395 | 51502.6 |
| ghkl domain-containing protein | DW035_06585 | Not Available | Positive | 1579383 - 1580666 | 48877.6 |
| lactonase family protein | DW035_06590 | Not Available | Negative | 1580684 - 1581838 | 41091.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

