Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yggs family pyridoxal phosphate-dependent enzyme | DW035_06490 | Not Available | Positive | 1553770 - 1554438 | 25180.2 |
| dihydroorotate dehydrogenase-like protein | DW035_06495 | Not Available | Positive | 1554452 - 1555429 | 35728.6 |
| hpaii family restriction endonuclease | DW035_06500 | Not Available | Negative | 1555515 - 1556600 | 41234.7 |
| hypothetical protein | DW035_06505 | Not Available | Positive | 1556713 - 1556895 | 7015.64 |
| ion transporter | DW035_06510 | Not Available | Positive | 1557040 - 1557858 | 31532.1 |
| hypothetical protein | DW035_06515 | Not Available | Positive | 1557862 - 1558323 | 17485.9 |
| dna/rna non-specific endonuclease | DW035_06520 | Not Available | Positive | 1558336 - 1559259 | 35388.2 |
| abc transporter atp-binding protein | DW035_06530 | Not Available | Negative | 1559557 - 1560231 | 24711.8 |
| abc transporter permease | DW035_06535 | Not Available | Negative | 1560257 - 1562626 | 89294.7 |
| ahpc/tsa family protein | DW035_06540 | Not Available | Negative | 1562652 - 1564199 | 59123.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

