Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m48 family peptidase | DW035_06440 | Not Available | Positive | 1542927 - 1543721 | 29002.1 |
| glycine zipper family protein | DW035_06445 | Not Available | Positive | 1543744 - 1544412 | 23566.2 |
| atp-dependent clp protease adaptor clps | DW035_06450 | Not Available | Positive | 1544446 - 1544754 | 11843.2 |
| aaa family atpase | DW035_06455 | Not Available | Positive | 1544769 - 1546985 | 83305.9 |
| leucyl/phenylalanyl-trna--protein transferase | DW035_06460 | Not Available | Positive | 1546996 - 1547637 | 24449.7 |
| proline--trna ligase | DW035_06465 | Not Available | Negative | 1547714 - 1549204 | 56961.1 |
| abc transporter permease | DW035_06470 | Not Available | Negative | 1549295 - 1550545 | 46499.0 |
| pyridoxal phosphate-dependent aminotransferase | DW035_06475 | Not Available | Negative | 1550542 - 1551744 | 45079.2 |
| fucose isomerase | DW035_06480 | Not Available | Positive | 1551950 - 1553188 | 46313.2 |
| duf4494 domain-containing protein | DW035_06485 | Not Available | Positive | 1553269 - 1553751 | 18232.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

