Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s dicluster domain-containing protein | DW035_06320 | Not Available | Positive | 1512760 - 1514235 | 54785.4 |
| [fefe] hydrogenase h-cluster radical sam maturase hyde | DW035_06325 | Not Available | Positive | 1514240 - 1515286 | 39301.4 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | DW035_06330 | Not Available | Positive | 1515301 - 1516719 | 53858.5 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | DW035_06335 | Not Available | Positive | 1516748 - 1517932 | 44105.7 |
| iron-sulfur cluster repair di-iron protein | DW035_06340 | Not Available | Negative | 1518002 - 1518730 | 27964.8 |
| gtp-binding protein | DW035_06345 | Not Available | Positive | 1518903 - 1520162 | 48369.3 |
| cytochrome c nitrite reductase small subunit | DW035_06360 | Not Available | Negative | 1521904 - 1522464 | 20805.2 |
| hypothetical protein | DW035_06365 | Not Available | Negative | 1523058 - 1523318 | 9954.27 |
| sel1 repeat family protein | DW035_06375 | Not Available | Negative | 1523731 - 1525947 | 83315.7 |
| nuclear transport factor 2 family protein | DW035_06380 | Not Available | Negative | 1525967 - 1526965 | 38600.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

