Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin reductase family protein | DW035_06220 | Not Available | Positive | 1493804 - 1494370 | 21217.8 |
| port family protein | DW035_06225 | Not Available | Positive | 1494378 - 1495115 | 27802.7 |
| serine hydroxymethyltransferase | DW035_06230 | Not Available | Positive | 1495146 - 1496426 | 47048.7 |
| ompa family protein | DW035_06235 | Not Available | Positive | 1496451 - 1497167 | 24302.8 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DW035_06240 | Not Available | Positive | 1497250 - 1497945 | 26829.2 |
| trimeric intracellular cation channel family protein | DW035_06245 | Not Available | Negative | 1497957 - 1498574 | 22547.4 |
| duf3078 domain-containing protein | DW035_06250 | Not Available | Negative | 1498603 - 1500069 | 56694.4 |
| ctp synthase | DW035_06255 | Not Available | Positive | 1500409 - 1502007 | 60031.2 |
| membrane protein insertase yidc | DW035_06260 | Not Available | Positive | 1502037 - 1503896 | 71368.1 |
| ion transporter | DW035_06265 | Not Available | Positive | 1504032 - 1504922 | 34200.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

