Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_06170 | Not Available | Negative | 1481333 - 1484521 | 117868.0 |
| lyttr family transcriptional regulator | DW035_06175 | Not Available | Negative | 1484564 - 1485043 | 18593.5 |
| hypothetical protein | DW035_06180 | Not Available | Negative | 1485225 - 1485773 | 19928.8 |
| rpn family recombination-promoting nuclease/putative transposase | DW035_06185 | Not Available | Positive | 1486033 - 1486902 | 33557.0 |
| gdp-mannose 4,6-dehydratase | DW035_06190 | Not Available | Positive | 1487012 - 1488106 | 41256.1 |
| gdp-l-fucose synthase | DW035_06195 | Not Available | Positive | 1488123 - 1489241 | 41963.5 |
| upxy family transcription antiterminator | DW035_06200 | Not Available | Positive | 1489247 - 1489762 | 20060.7 |
| penicillin-binding protein | DW035_06205 | Not Available | Negative | 1489851 - 1492178 | 88531.0 |
| aspartate carbamoyltransferase | DW035_06210 | Not Available | Positive | 1492372 - 1493313 | 36230.6 |
| aspartate carbamoyltransferase regulatory subunit | DW035_06215 | Not Available | Positive | 1493342 - 1493800 | 17358.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

