Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1735 domain-containing protein | DW035_00435 | Not Available | Negative | 143692 - 145077 | 49819.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_00440 | Not Available | Negative | 145091 - 147025 | 73299.8 |
| tonb-dependent receptor | DW035_00445 | Not Available | Negative | 147039 - 150137 | 115489.0 |
| 6-phosphofructokinase | DW035_00450 | Not Available | Negative | 150670 - 151680 | 35698.4 |
| hypothetical protein | DW035_00455 | Not Available | Positive | 151834 - 153339 | 57471.0 |
| hypothetical protein | DW035_00460 | Not Available | Positive | 153349 - 155274 | 73691.8 |
| duf3108 domain-containing protein | DW035_00465 | Not Available | Positive | 155271 - 156086 | 31310.9 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 156763 - 156871 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 156976 - 159861 | Not Available |
| ribonuclease iii | DW035_00470 | Not Available | Negative | 156228 - 157247 | 38765.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

