Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DW035_06065 | Not Available | Positive | 1458889 - 1461708 | 104798.0 |
| hypothetical protein | DW035_06070 | Not Available | Positive | 1461715 - 1462137 | 15604.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_06075 | Not Available | Positive | 1462150 - 1463820 | 63252.8 |
| hypothetical protein | DW035_06080 | Not Available | Positive | 1463933 - 1465507 | 62201.5 |
| hypothetical protein | DW035_06085 | Not Available | Positive | 1465912 - 1466133 | 8571.32 |
| lipopolysaccharide biosynthesis protein | DW035_06095 | Not Available | Positive | 1466702 - 1468228 | 57506.5 |
| glycosyltransferase | DW035_06100 | Not Available | Positive | 1468225 - 1469169 | 36188.7 |
| glycosyltransferase family 2 protein | DW035_06105 | Not Available | Positive | 1469166 - 1469747 | 21922.1 |
| hypothetical protein | DW035_06110 | Not Available | Positive | 1469921 - 1470154 | 9174.72 |
| glycosyl transferase | DW035_06115 | Not Available | Positive | 1470136 - 1470876 | 29144.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

