Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DW035_05955 | Not Available | Positive | 1435581 - 1436864 | 47136.1 |
| iron-containing alcohol dehydrogenase | DW035_05960 | Not Available | Negative | 1436936 - 1438108 | 42860.9 |
| polyribonucleotide nucleotidyltransferase | DW035_05965 | Not Available | Negative | 1438265 - 1440448 | 80523.9 |
| duf4369 domain-containing protein | DW035_05970 | Not Available | Positive | 1440694 - 1441839 | 42647.7 |
| transcription elongation factor grea | DW035_05975 | Not Available | Positive | 1442126 - 1442590 | 16737.4 |
| hit family protein | DW035_05980 | Not Available | Positive | 1442644 - 1443051 | 15103.3 |
| tonb-dependent receptor | DW035_05985 | Not Available | Positive | 1443165 - 1445540 | 89062.5 |
| mannose-1-phosphate guanylyltransferase | DW035_05990 | Not Available | Negative | 1445624 - 1446667 | 39915.7 |
| Trna-leu | Not Available | Not Available | Positive | 1446835 - 1446918 | Not Available |
| fic family protein | DW035_06000 | Not Available | Positive | 1447094 - 1447903 | 30981.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

