Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna processing protein rimm | DW035_05905 | Not Available | Positive | 1421912 - 1422424 | 19610.3 |
| m23 family peptidase | DW035_05910 | Not Available | Positive | 1422439 - 1423296 | 32071.6 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DW035_05915 | Not Available | Positive | 1423302 - 1424459 | 42324.4 |
| rip metalloprotease rsep | DW035_05920 | Not Available | Positive | 1424499 - 1425839 | 50835.2 |
| s9 family peptidase | DW035_05925 | Not Available | Positive | 1425950 - 1428343 | 91830.4 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DW035_05930 | Not Available | Negative | 1429038 - 1429499 | 17545.0 |
| anaerobic ribonucleoside triphosphate reductase | DW035_05935 | Not Available | Negative | 1429517 - 1431901 | 89960.2 |
| hd domain-containing protein | DW035_05940 | Not Available | Negative | 1432381 - 1433811 | 54680.0 |
| hypothetical protein | DW035_05945 | Not Available | Positive | 1434140 - 1434964 | 30470.8 |
| acyl-coa thioesterase | DW035_05950 | Not Available | Negative | 1435011 - 1435460 | 17222.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

