Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine repressor | DW035_05755 | Not Available | Negative | 1391885 - 1392367 | 18098.9 |
| class i sam-dependent methyltransferase | DW035_05760 | Not Available | Positive | 1392540 - 1393265 | 27328.8 |
| pepsy domain-containing protein | DW035_05765 | Not Available | Negative | 1393255 - 1394379 | 42340.5 |
| duf4374 domain-containing protein | DW035_05770 | Not Available | Negative | 1394389 - 1395810 | 51665.1 |
| tonb-dependent receptor | DW035_05775 | Not Available | Negative | 1395840 - 1398200 | 88635.8 |
| cof-type had-iib family hydrolase | DW035_05780 | Not Available | Negative | 1398443 - 1399225 | 29492.5 |
| glutamate 5-kinase | DW035_05785 | Not Available | Positive | 1399679 - 1400770 | 40027.4 |
| gfo/idh/moca family oxidoreductase | DW035_05790 | Not Available | Negative | 1400782 - 1401918 | 43138.6 |
| hypothetical protein | DW035_05795 | Not Available | Negative | 1401953 - 1402342 | 15264.5 |
| xre family transcriptional regulator | DW035_05800 | Not Available | Positive | 1402436 - 1402990 | 20833.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

