Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW035_05705 | Not Available | Negative | 1377146 - 1378789 | 62055.5 |
| tonb-dependent receptor | DW035_05710 | Not Available | Negative | 1378814 - 1381804 | 109332.0 |
| duf5009 domain-containing protein | DW035_05715 | Not Available | Negative | 1381834 - 1382901 | 39955.4 |
| alpha-n-acetylglucosaminidase | DW035_05720 | Not Available | Negative | 1382930 - 1385098 | 83538.5 |
| mate family efflux transporter | DW035_05725 | Not Available | Positive | 1385276 - 1386625 | 49227.0 |
| pyrroline-5-carboxylate reductase | DW035_05730 | Not Available | Negative | 1386715 - 1387488 | 27188.0 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | DW035_05735 | Not Available | Negative | 1387836 - 1388960 | 41004.6 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DW035_05740 | Not Available | Negative | 1389048 - 1390016 | 35932.2 |
| argininosuccinate synthase | DW035_05745 | Not Available | Negative | 1390013 - 1391221 | 44976.6 |
| n-acetyltransferase | DW035_05750 | Not Available | Negative | 1391299 - 1391868 | 21150.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

