Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor p | DW035_05655 | Not Available | Positive | 1361645 - 1362211 | 21333.6 |
| glycoside hydrolase family 95 protein | DW035_05660 | Not Available | Negative | 1362298 - 1364727 | 90942.6 |
| type b 50s ribosomal protein l31 | DW035_05665 | Not Available | Negative | 1365049 - 1365303 | 9609.51 |
| class ii fructose-1,6-bisphosphate aldolase | DW035_05670 | Not Available | Positive | 1365650 - 1366657 | 36656.9 |
| duf4250 domain-containing protein | DW035_05675 | Not Available | Negative | 1366738 - 1366914 | 6910.36 |
| m48 family peptidase | DW035_05680 | Not Available | Positive | 1367024 - 1367731 | 27155.3 |
| mfs transporter araj | DW035_05685 | Not Available | Positive | 1367820 - 1369001 | 42598.6 |
| response regulator | DW035_05690 | Not Available | Positive | 1369011 - 1373144 | 156630.0 |
| glycoside hydrolase family 28 protein | DW035_05695 | Not Available | Negative | 1373236 - 1374636 | 51505.2 |
| glycoside hydrolase family 92 protein | DW035_05700 | Not Available | Negative | 1374661 - 1376988 | 88709.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

