Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenylosuccinate lyase | DW035_05605 | Not Available | Positive | 1351245 - 1352591 | 50866.9 |
| rrna pseudouridine synthase | DW035_05610 | Not Available | Positive | 1352657 - 1353964 | 49840.1 |
| asparagine--trna ligase | DW035_05615 | Not Available | Positive | 1354048 - 1355451 | 53411.0 |
| duf4488 domain-containing protein | DW035_05620 | Not Available | Positive | 1355607 - 1356098 | 18682.6 |
| 50s ribosomal protein l13 | DW035_05625 | Not Available | Positive | 1356380 - 1356841 | 16932.8 |
| 30s ribosomal protein s9 | DW035_05630 | Not Available | Positive | 1356848 - 1357234 | 14481.8 |
| 30s ribosomal protein s2 | DW035_05635 | Not Available | Positive | 1357444 - 1358283 | 30649.1 |
| elongation factor ts | DW035_05640 | Not Available | Positive | 1358405 - 1359397 | 35577.9 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DW035_05645 | Not Available | Positive | 1359585 - 1361099 | 55759.0 |
| 50s ribosomal protein l34 | DW035_05650 | Not Available | Negative | 1361293 - 1361454 | 6201.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

