Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-arabinofuranosidase | DW035_00385 | Not Available | Negative | 120408 - 122387 | 74670.4 |
| response regulator | DW035_00390 | Not Available | Positive | 122626 - 126822 | 159430.0 |
| tonb-dependent receptor | DW035_00395 | Not Available | Positive | 127363 - 130557 | 118237.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_00400 | Not Available | Positive | 130591 - 132342 | 66414.6 |
| hypothetical protein | DW035_00405 | Not Available | Positive | 132415 - 134199 | 64391.4 |
| arabinan endo-1,5-alpha-l-arabinosidase | DW035_00410 | Not Available | Positive | 134268 - 136169 | 70735.9 |
| arabinan endo-1,5-alpha-l-arabinosidase | DW035_00415 | Not Available | Positive | 136269 - 137276 | 37515.5 |
| glycoside hydrolase family 97 protein | DW035_00420 | Not Available | Positive | 137444 - 139384 | 72936.6 |
| cysteine--trna ligase | DW035_00425 | Not Available | Positive | 139482 - 140963 | 56143.0 |
| carbohydrate-binding protein | DW035_00430 | Not Available | Negative | 141038 - 143608 | 97300.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

